OH... the cooler. The fan plugs go into teh CPU fan headers, should be labelled on the board itself. If not the motherboard manual should have a diagram in it showing connection spots in a nice diagram.
If the second cable is also a fan header see if your board supports dual cpu fans. Its a decent newer board so it might. If not it does not really matter.
If it is a 4pin USB connector like the Antec Kühler 920 uses it has to go to USB header. There are 10 point (only 9 pins though) headers located near the bottom edge of the board usually and also these are also well defined on the motherboard itself or on in your user manual.
A simple guide for hooking up 4pin USB headers to 10 pin posrts is too look at the 10 point USB header so the missing pin is 5 pins across the top and 4 pins across the bottom. with a missing pin at the bottom right. Now remember that the right 4 pins are all ground points. Looking at the cable coming off your USB device you can see 4 wires. on one side there is a black wire. That is the ground.
I can take a picture tomorrow when there is better light in here if you need an image to understand.
Here is an example with a standard 9pin USB cable.
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