Melt Down
Well I am at 250/500 for the a542 in water protein so I guess the overclocking had something to do with it and after it been running for 18 hours of folding it crashed when I opened IE with overclockers.com !!!heheehhe. Then hardly any of my old stable settings seemed to work anymore so now I am back at stock till I can figure out the problem.
Yet again my work progress has started me over after I restarted my computer. I keep skipping from proteins never finishing one and wasting time and cpu cycles. At the time 12:22:29 it says that I received a faulty work packet and then it sends my information to stanford and says thank you and downloads a new core and starts me with something else. Is it supposed to do this and will I every finish anything with it doing that and sending partial data? Here is the code.
[03:45:51] Protein: P635_villin_c1_nat
[03:45:51] - Run: 11 (Clone 43, Gen 4)
[03:45:51] - Frames Completed: 64, Remaining: 336
[03:45:51] - Dynamic steps required: 4200000
[03:45:51]
[03:45:51] Writing local files:
[03:45:51]
[03:45:51] parameters work/wudata_01.prm
[03:45:51] - Writing "work/wudata_01.key": (overwrite) successful.
[03:45:51] - Writing "work/wudata_01.xyz": (overwrite) successful.
[03:45:51] - Writing "work/wudata_01.prm": (overwrite) successful.
[03:45:52] - Writing "work/wudata_01.key": (append) successful.
[03:45:53]
[03:45:53] PROJECT="work/wudata_01", NSTEPS=4200000, DT=2.0000, DTDUMP=25.000000, TEMP=298.00
[03:45:54] TINKER: Software Tools for Molecular Design
[03:45:54] Version 3.8 October 2000
[03:45:54] Copyright (c) Jay William Ponder 1990-2000
[03:45:54] portions Copyright (c) Michael Shirts 2001
[03:45:54] portions Copyright (c) Vijay S Pande 2001
[03:52:14] Finished a frame (65)
[03:57:17] Opening "C:\Program Files\Internet Explorer\iexplore.exe" -nohome
http://folding.stanford.edu/cgi-bin/userpage?q=Legend911 http://folding.stanford.edu/cgi-bin/userpage?q=Legend911
[03:58:25] Finished a frame (66)
[04:04:29] Finished a frame (67)
[04:11:29] Finished a frame (68)
[04:22:12] Finished a frame (69)
[04:32:44] Finished a frame (70)
[04:43:15] Finished a frame (71)
[04:53:46] Finished a frame (72)
[05:00:41] Finished a frame (73)
[05:07:12] Finished a frame (74)
[05:17:48] Finished a frame (75)
[05:28:17] Finished a frame (76)
[05:35:03] Finished a frame (77)
[05:41:09] Finished a frame (78)
[05:47:19] Finished a frame (79)
[05:53:29] Finished a frame (80)
[09:44:36] + Working...
[11:35:59] CoreStatus = C0000005 (-1073741819)
[11:35:59] Client-core communications error: ERROR 0xc0000005
[11:35:59] Deleting current work unit & continuing...
[11:36:03] + Attempting to get work packet
[11:36:03] - Connecting to assignment server
[11:36:09] - Successful: assigned to (171.64.122.124).
[11:36:09] + News From Folding@Home: Welcome to Folding@Home
[11:36:09] Loaded queue successfully.
[11:36:09] - Error: Getwork #1 failed, and no other work to do. Waiting before retry
Folding@home Client Shutdown.
--- Opening Log file [April 17 11:37:18]
# Windows Graphical Edition ###################################################
###############################################################################
Folding@home Client Version 3.24
http://foldingathome.stanford.edu
email:
[email protected]
###############################################################################
###############################################################################
[11:37:18] - Ask before connecting: No
[11:37:18] - Use IE connection settings: Yes
[11:37:18] - User name: Legend911 (Team 32)
[11:37:18] - User ID = 78946F6017598F27
[11:37:18] - Machine ID: 1
[11:37:18]
[11:37:18] Loaded queue successfully.
[11:37:18] Initialization complete
[11:37:18] + Benchmarking ...
[11:37:22] + Attempting to get work packet
[11:37:22] - Connecting to assignment server
[11:37:28] - Successful: assigned to (171.64.122.121).
[11:37:28] + News From Folding@Home: Welcome to Folding@Home
[11:37:28] Loaded queue successfully.
[11:37:28] - Deadline time not received.
[11:37:29] + Closed connections
[11:37:29]
[11:37:29] + Processing work unit
[11:37:29] Core required: FahCore_65.exe
[11:37:29] Core found.
[11:37:29] Working on Unit 02 [April 17 11:37:29]
[11:37:29] + Working ...
[11:37:29] Folding@Home Client Core Version 2.47 (June 14, 2002)
[11:37:29]
[11:37:29] Proj: work/wudata_02
[11:37:29] nsteps: 5000000 dt: 2.000000 dt_dump: 250.000000 temperature: 298.000000
[11:37:29] xyzfile:
[11:37:29] " 403 P635_villin_c1_nat
[11:37:29] 1 N 29.932526 68.789708 -30.989811 20..."
[11:37:29] keyfile:
[11:37:29] "parameters ./proj635.prm
[11:37:29] NOVERSION
[11:37:29] ARCHIVE
[11:37:29]
[11:37:29] cutoff 16.0
[11:37:29] taper 12...."
[11:37:29]
[11:37:29] - Couldn't get size info for dyn file: work/wudata_02.dyn
[11:37:29] Starting from initial work packet
[11:37:29]
[11:37:29] Protein: P635_villin_c1_nat
[11:37:29] - Run: 11 (Clone 43, Gen 4)
[11:37:29] - Frames Completed: 0, Remaining: 400
[11:37:29] - Dynamic steps required: 5000000
[11:37:29]
[11:37:29] Writing local files:
[11:37:29]
[11:37:29] parameters work/wudata_02.prm
[11:37:29] - Writing "work/wudata_02.key": (overwrite) successful.
[11:37:29] - Writing "work/wudata_02.xyz": (overwrite) successful.
[11:37:29] - Writing "work/wudata_02.prm": (overwrite) successful.
[11:37:30] - Writing "work/wudata_02.key": (append) successful.
[11:37:30]
[11:37:30] PROJECT="work/wudata_02", NSTEPS=5000000, DT=2.0000, DTDUMP=25.000000, TEMP=298.00
[11:37:30] TINKER: Software Tools for Molecular Design
[11:37:30] Version 3.8 October 2000
[11:37:30] Copyright (c) Jay William Ponder 1990-2000
[11:37:30] portions Copyright (c) Michael Shirts 2001
[11:37:30] portions Copyright (c) Vijay S Pande 2001
[11:38:31] Opening "C:\Program Files\Internet Explorer\iexplore.exe" -nohome
http://folding.stanford.edu/cgi-bin/userpage?q=Legend911 http://folding.stanford.edu/cgi-bin/userpage?q=Legend911
[11:39:40] + Paused
[11:39:40] Suspending work thread...
--- Opening Log file [April 17 11:46:25]
# Windows Graphical Edition ###################################################
###############################################################################
Folding@home Client Version 3.24
http://foldingathome.stanford.edu
email:
[email protected]
###############################################################################
###############################################################################
[11:46:25] - Ask before connecting: No
[11:46:25] - Use IE connection settings: Yes
[11:46:25] - User name: Legend911 (Team 32)
[11:46:25] - User ID = 78946F6017598F27
[11:46:25] - Machine ID: 1
[11:46:25]
[11:46:25] Loaded queue successfully.
[11:46:25] Initialization complete
[11:46:25] + Benchmarking ...
[11:46:27]
[11:46:27] + Processing work unit
[11:46:27] Core required: FahCore_65.exe
[11:46:27] Core found.
[11:46:27] Working on Unit 02 [April 17 11:46:27]
[11:46:27] + Working ...
[11:46:27] Folding@Home Client Core Version 2.47 (June 14, 2002)
[11:46:27]
[11:46:27] Proj: work/wudata_02
[11:46:27] nsteps: 5000000 dt: 2.000000 dt_dump: 250.000000 temperature: 298.000000
[11:46:27] xyzfile:
[11:46:27] " 403 P635_villin_c1_nat
[11:46:27] 1 N 29.932526 68.789708 -30.989811 20..."
[11:46:27] keyfile:
[11:46:27] "parameters ./proj635.prm
[11:46:27] NOVERSION
[11:46:27] ARCHIVE
[11:46:27]
[11:46:27] cutoff 16.0
[11:46:27] taper 12...."
[11:46:27]
[11:46:27] - Couldn't get size info for dyn file: work/wudata_02.dyn
[11:46:27] Starting from initial work packet
[11:46:27]
[11:46:27] Protein: P635_villin_c1_nat
[11:46:27] - Run: 11 (Clone 43, Gen 4)
[11:46:27] - Frames Completed: 0, Remaining: 400
[11:46:27] - Dynamic steps required: 5000000
[11:46:27]
[11:46:27] Writing local files:
[11:46:27]
[11:46:27] parameters work/wudata_02.prm
[11:46:27] - Writing "work/wudata_02.key": (overwrite) successful.
[11:46:27] - Writing "work/wudata_02.xyz": (overwrite) successful.
[11:46:28] - Writing "work/wudata_02.prm": (overwrite) successful.
[11:46:28] - Writing "work/wudata_02.key": (append) successful.
[11:46:28]
[11:46:28] PROJECT="work/wudata_02", NSTEPS=5000000, DT=2.0000, DTDUMP=25.000000, TEMP=298.00
[11:46:28] TINKER: Software Tools for Molecular Design
[11:46:28] Version 3.8 October 2000
[11:46:28] Copyright (c) Jay William Ponder 1990-2000
[11:46:28] portions Copyright (c) Michael Shirts 2001
[11:46:28] portions Copyright (c) Vijay S Pande 2001
[11:53:06] Finished a frame (1)
[11:54:33] + Paused
[11:54:33] Suspending work thread...
[12:21:06] + Working ...
[12:21:06] Resuming work thread...
[12:22:29]
[12:22:29] Received faulty work unit.
[12:22:39] logfile size: 2536
[12:22:39] - Writing 3048 bytes of core data to disk.
[12:22:39] end (WriteWorkResults)
[12:22:39]
[12:22:39] Folding@Home2 Core Shutdown: BAD_WORK_UNIT
[12:22:43] CoreStatus = 72 (114)
[12:22:43] Sending work to server
[12:22:43] + Attempting to send results
[12:22:49] + Results successfully sent
[12:22:49] Thank you for your contribution to Folding@home.
[12:22:53] + Attempting to get work packet
[12:22:53] - Connecting to assignment server
[12:22:54] - Successful: assigned to (171.64.122.124).
[12:22:54] + News From Folding@Home: Welcome to Folding@Home
[12:22:54] Loaded queue successfully.
[12:22:58] + Closed connections
[12:23:03]
[12:23:03] + Processing work unit
[12:23:03] Core required: FahCore_78.exe
[12:23:03] Core not found.
[12:23:03] - Core is not present or corrupted.
[12:23:03] - Attempting to download new core...
[12:23:03] + Downloading new core: FahCore_78.exe
[12:23:05] + 10240 bytes downloaded
[12:23:05] + 20480 bytes downloaded
[12:23:05] + 30720 bytes downloaded
[12:23:05] + 40960 bytes downloaded
[12:23:05] + 51200 bytes downloaded
[12:23:05] + 61440 bytes downloaded
[12:23:05] + 71680 bytes downloaded
[12:23:05] + 81920 bytes downloaded
[12:23:05] + 92160 bytes downloaded
[12:23:05] + 102400 bytes downloaded
[12:23:05] + 112640 bytes downloaded
[12:23:05] + 122880 bytes downloaded
[12:23:05] + 133120 bytes downloaded
[12:23:05] + 143360 bytes downloaded
[12:23:05] + 153600 bytes downloaded
[12:23:05] + 163840 bytes downloaded
[12:23:05] + 174080 bytes downloaded
[12:23:05] + 184320 bytes downloaded
[12:23:05] + 194560 bytes downloaded
[12:23:06] + 204800 bytes downloaded
[12:23:06] + 215040 bytes downloaded
[12:23:06] + 225280 bytes downloaded
[12:23:06] + 235520 bytes downloaded
[12:23:06] + 245760 bytes downloaded
[12:23:06] + 256000 bytes downloaded
[12:23:06] + 266240 bytes downloaded
[12:23:06] + 276480 bytes downloaded
[12:23:06] + 286720 bytes downloaded
[12:23:06] + 296960 bytes downloaded
[12:23:06] + 307200 bytes downloaded
[12:23:06] + 317440 bytes downloaded
[12:23:06] + 327680 bytes downloaded
[12:23:06] + 337920 bytes downloaded
[12:23:06] + 348160 bytes downloaded
[12:23:06] + 358400 bytes downloaded
[12:23:06] + 368640 bytes downloaded
[12:23:06] + 378880 bytes downloaded
[12:23:06] + 389120 bytes downloaded
[12:23:06] + 399360 bytes downloaded
[12:23:06] + 409600 bytes downloaded
[12:23:06] + 419840 bytes downloaded
[12:23:06] + 430080 bytes downloaded
[12:23:06] + 440320 bytes downloaded
[12:23:06] + 450560 bytes downloaded
[12:23:06] + 460800 bytes downloaded
[12:23:06] + 471040 bytes downloaded
[12:23:07] + 481280 bytes downloaded
[12:23:07] + 491520 bytes downloaded
[12:23:07] + 501760 bytes downloaded
[12:23:07] + 512000 bytes downloaded
[12:23:07] + 522240 bytes downloaded
[12:23:07] + 532480 bytes downloaded
[12:23:07] + 542720 bytes downloaded
[12:23:07] + 552960 bytes downloaded
[12:23:07] + 563200 bytes downloaded
[12:23:07] + 573440 bytes downloaded
[12:23:07] + 583680 bytes downloaded
[12:23:07] + 593920 bytes downloaded
[12:23:07] + 602709 bytes downloaded
[12:23:07] Verifying core Core_78.fah...
[12:23:07] Signature is VALID
[12:23:07] Created: Wednesday April 10, 2002 00:01:22 UTC
[12:23:07] Signed: Tuesday March 4, 2003 00:20:31 UTC
[12:23:07]
[12:23:07] Trying to unzip core FahCore_78.exe
[12:23:07] Decompressed FahCore_78.exe (1728512 bytes) successfully
[12:23:07] + Core successfully engaged
[12:23:12]
[12:23:12] + Processing work unit
[12:23:12] Core required: FahCore_78.exe
[12:23:12] Core found.
[12:23:12] Working on Unit 03 [April 17 12:23:12]
[12:23:12] + Working ...
[12:23:13]
[12:23:13] *------------------------------*
[12:23:13] Folding@home Gromacs Core
[12:23:13] Version 1.43 (March 4, 2003)
[12:23:13]
[12:23:13] Preparing to commence simulation
[12:23:13] - Looking at optimizations...
[12:23:13] - Created dyn
[12:23:13] - Files status OK
[12:23:13] - Expanded 347940 -> 1760993 (decompressed 506.1 percent)
[12:23:13] - Starting from initial work packet
[12:23:13]
[12:23:13] Project: 542 (Run 6, Clone 16, Gen 12)
[12:23:13]
[12:23:13] Assembly optimizations on if available.
[12:23:13] Entering M.D.
[12:23:20] Protein: p542_BBA5_N in water
[12:23:20]
[12:23:20] Writing local files
[12:23:22] Writing local files
[12:23:22] Completed 0 out of 500000 steps (0)
[12:23:57] Quit 101 - Fatal error:
[12:23:57] Step 363, time 0.726 (ps) LINCS WARNING
[12:23:57] relative constraint deviation after LINCS:
[12:23:57] max 0.000000 (between atoms 1 and 2) rms 1.#QNAN0
[12:23:57]
[12:23:57] Simulation instability has been encountered. The run has entered a
[12:23:57] state from which no further progress can be made.
[12:23:57] If you often see other project units terminating early like this
[12:23:57] too, you may wish to check the stability of your computer (issues
[12:23:57] such as high temperature, overclocking, etc.).
[12:23:57] Going to send back what have done.
[12:23:57] logfile size: 7667
[12:23:57] - Writing 8340 bytes of core data to disk...
[12:23:57] ... Done.
[12:23:57]
[12:23:57] Folding@home Core Shutdown: EARLY_UNIT_END
[12:24:01] CoreStatus = 72 (114)
[12:24:01] Sending work to server
[12:24:01] + Attempting to send results
[12:24:01] + Results successfully sent
[12:24:01] Thank you for your contribution to Folding@home.
[12:24:05] + Attempting to get work packet
[12:24:05] - Connecting to assignment server
[12:24:06] - Successful: assigned to (171.64.122.124).
[12:24:06] + News From Folding@Home: Welcome to Folding@Home
[12:24:06] Loaded queue successfully.
[12:24:10] + Closed connections
[12:24:15]
[12:24:15] + Processing work unit
[12:24:15] Core required: FahCore_78.exe
[12:24:15] Core found.
[12:24:15] Working on Unit 04 [April 17 12:24:15]
[12:24:15] + Working ...
[12:24:15]
[12:24:15] *------------------------------*
[12:24:15] Folding@home Gromacs Core
[12:24:15] Version 1.43 (March 4, 2003)
[12:24:15]
[12:24:15] Preparing to commence simulation
[12:24:15] - Looking at optimizations...
[12:24:15] - Created dyn
[12:24:15] - Files status OK
[12:24:15] - Expanded 350951 -> 1760993 (decompressed 501.7 percent)
[12:24:15] - Starting from initial work packet
[12:24:15]
[12:24:15] Project: 542 (Run 8, Clone 14, Gen 8)
[12:24:15]
[12:24:15] Assembly optimizations on if available.
[12:24:15] Entering M.D.
[12:24:21] Protein: p542_BBA5_N in water
