Yeah. I sent a request to Intel about the issue, and they told me a similar thing. They said that the other 4 pins of the 12v plug were indeed for extra power when dual procs are used. Since the server only has one 2.4ghz Xeon, Intel assured me that if anything goes wrong with the board OR the PSU, they will consider it a bad board, and replace the damaged components. Hearing that from an international conglomerate took me off guard, but it was from a rep, and I saved/printed the email.
If the second problem is unable to be properly solved, I guess I'll have no choice but to replace the PSU (OUCH!). The AUX conector is the wrong size, too. I checked the power ratings/timings of the server board, and they match up with the PSU, but they won't fit... You don't happen to know of an adapter I can get instead? The PSU came with the server chassie, so it'll end up being yet another expense I'll have to absorb...
*EDIT*
If I do have to replace the PSU, can you suggest a redundant power supply that DOES have the EPS12V line, and the AUX plug?
(If you don't know what the AUX plug on this server mobo looks like, there's a pic on Intel's website)