Going with the larger core will allow you to use more fans if you so choose - going with the smaller core limits you to 2 fans max.
The graphs in those links also show that airflow through the heatercore is much more important than flowrate through it at reasonable flowrate levels.
The ability to use up to 4 120mm fans instead of only 2 makes the larger core a better choice in my opinion, so long as you have room for it.
If room is an issue, the smaller core offers very good performance though also.