- Joined
- Apr 29, 2002
OK I've been running VMW player 3.0 and been averaging 5kPPD.
Now I have this A1 core WU running over one hour per step and only using a fraction of the CPU's 4 core power. Is this a bad WU or just what's left at the bottom of Stanford's work server barrel?
Now I have this A1 core WU running over one hour per step and only using a fraction of the CPU's 4 core power. Is this a bad WU or just what's left at the bottom of Stanford's work server barrel?
Code:
[03:26:50] Verifying core Core_a1.fah...
[03:26:50] Signature is VALID
[03:26:50]
[03:26:50] Trying to unzip core FahCore_a1.exe
[03:26:51] Decompressed FahCore_a1.exe (3625104 bytes) successfully
[03:26:51] + Core successfully engaged
[03:26:56]
[03:26:56] + Processing work unit
[03:26:56] Work type a1 not eligible for variable processors
[03:26:56] Core required: FahCore_a1.exe
[03:26:56] Core found.
[03:26:56] Working on queue slot 02 [November 1 03:26:56 UTC]
[03:26:56] + Working ...
[03:26:56] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 02 -checkpoint 30 -verbose -lifeline 7743 -version 624'
[03:26:56]
[03:26:56] *------------------------------*
[03:26:56] Folding@Home Gromacs SMP Core
[03:26:56] Version 1.74 (November 27, 2006)
[03:26:56]
[03:26:56] Preparing to commence simulation
[03:26:56] - Ensuring status. Please wait.
[03:26:56] Created dyn
[03:26:56] - Files status OK
[03:26:57] - Expanded 1158330 -> 6173133 (decompressed 532.9 percent)
[03:26:57] - Starting from initial work packet
[03:26:57]
[03:26:57] Project: 5102 (Run 0, Clone 0, Gen 55)
[03:26:57]
[03:26:57] Assembly optimizations on if available.
[03:26:57] Entering M.D.
[03:27:14] tial work pa- Starting from initial work packet
[03:27:14]
[03:27:14] Project: Entering M.D.
[03:27:14] lone 0, Gen 55)
[03:27:14]
[03:27:14] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=SMP-FAH-1
NNODES=4, MYRANK=3, HOSTNAME=SMP-FAH-1
NNODES=4, MYRANK=1, HOSTNAME=SMP-FAH-1
NNODES=4, MYRANK=0, HOSTNAME=SMP-FAH-1
NODEID=2 argc=15
NODEID=3 argc=15
NODEID=0 argc=15
NODEID=1 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
[03:27:20] Rejecting checkpoint
starting mdrun 'Calmodulin in water'
2000000 steps, 4000.0 ps.
[03:27:20] ra SSE boost OK.
[03:27:20] in in waterExtra SSE boost OK.
[03:27:20]
[03:27:20] Extra SSE boost OK.
[03:27:21] Writing local files
[03:27:21] Completed 0 out of 2000000 steps (0 percent)
[03:57:21] Timered checkpoint triggered.
[04:05:23] Writing local files
[04:05:23] Completed 20000 out of 2000000 steps (1 percent)
[04:35:23] Timered checkpoint triggered.
[04:43:25] Writing local files
[04:43:25] Completed 40000 out of 2000000 steps (2 percent)
[05:13:25] Timered checkpoint triggered.
[05:21:22] Writing local files
[05:21:23] Completed 60000 out of 2000000 steps (3 percent)
[05:51:22] Timered checkpoint triggered.
[05:59:16] Writing local files
[05:59:16] Completed 80000 out of 2000000 steps (4 percent)
[06:29:16] Timered checkpoint triggered.
[06:37:10] Writing local files
[06:37:10] Completed 100000 out of 2000000 steps (5 percent)
[07:07:10] Timered checkpoint triggered.
[07:15:08] Writing local files
[07:15:08] Completed 120000 out of 2000000 steps (6 percent)
[07:22:46] - Autosending finished units... [November 1 07:22:46 UTC]
[07:22:46] Trying to send all finished work units
[07:22:46] + No unsent completed units remaining.
[07:22:46] - Autosend completed
[07:45:08] Timered checkpoint triggered.
[07:53:07] Writing local files
[07:53:07] Completed 140000 out of 2000000 steps (7 percent)
[08:23:06] Timered checkpoint triggered.
[08:30:57] Writing local files
[08:30:57] Completed 160000 out of 2000000 steps (8 percent)
[09:00:56] Timered checkpoint triggered.
[09:09:02] Writing local files
[09:09:03] Completed 180000 out of 2000000 steps (9 percent)