- Joined
- Mar 12, 2007
It looks like my client had problems yesterday getting a new WU. It segment faulted three times before it got a WU it liked. At first I thought I was having stability issues since I had just finished a large OC, but then I noticed that it didn't seem like any WU actually downloaded or it only got a fraction of the file and the client tried to start any way. What do you guys think? Was this just a fluke on their end?
BTW I tested my system with Prime blend for a day and a half before starting F@H again.
BTW I tested my system with Prime blend for a day and a half before starting F@H again.
Code:
-----------------------------------------------------------------------
Total 442153943.949952 100.0
-----------------------------------------------------------------------
NODE (s) Real (s) (%)
Time: 131684.000 131684.000 100.0
1d12h34:44
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 27.135 3.358 0.656 36.579
[11:13:24] Past main M.D. loop
[11:13:24] Will end MPI now
[11:14:24]
[11:14:24] Finished Work Unit:
[11:14:24] - Reading up to 3718704 from "work/wudata_03.arc": Read 3718704
[11:14:24] - Reading up to 1775116 from "work/wudata_03.xtc": Read 1775116
[11:14:24] goefile size: 0
[11:14:24] logfile size: 16913
[11:14:24] Leaving Run
[11:14:26] - Writing 5515133 bytes of core data to disk...
[11:14:26] ... Done.
[11:14:27] - Shutting down core
[11:16:27]
[11:16:27] Folding@home Core Shutdown: FINISHED_UNIT
[0]0:Return code = 100
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
[11:16:32] CoreStatus = 64 (100)
[11:16:32] Unit 3 finished with 62 percent of time to deadline remaining.
[11:16:32] Updated performance fraction: 0.553101
[11:16:32] Sending work to server
[11:16:32] + Attempting to send results
[11:16:32] - Reading file work/wuresults_03.dat from core
[11:16:32] (Read 5515133 bytes from disk)
[11:16:32] Connecting to http://171.64.65.56:8080/
[11:18:05] Posted data.
[11:18:05] Initial: 0000; - Uploaded at ~57 kB/s
[11:18:06] - Averaged speed for that direction ~56 kB/s
[11:18:06] + Results successfully sent
[11:18:06] Thank you for your contribution to Folding@Home.
[11:18:06] + Number of Units Completed: 46
[0]0:Return code = 18
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
[11:22:11] - Warning: Could not delete all work unit files (3): Core returned invalid code
[11:22:11] Trying to send all finished work units
[11:22:11] + No unsent completed units remaining.
[11:22:11] - Preparing to get new work unit...
[11:22:11] + Attempting to get work packet
[11:22:11] - Will indicate memory of 1005 MB
[11:22:11] - Connecting to assignment server
[11:22:11] Connecting to http://assign.stanford.edu:8080/
[11:22:11] Posted data.
[11:22:11] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[11:22:11] + News From Folding@Home: Welcome to Folding@Home
[11:22:11] Loaded queue successfully.
[11:22:11] Connecting to http://171.64.65.56:8080/
[11:22:14] Posted data.
[11:22:14] Initial: 0000; - Receiving payload (expected size: 2436021)
[11:22:35] - Downloaded at ~113 kB/s
[11:22:35] - Averaged speed for that direction ~269 kB/s
[11:22:35] + Received work.
[11:22:35] Trying to send all finished work units
[11:22:35] + No unsent completed units remaining.
[11:22:35] + Closed connections
[11:22:35]
[11:22:35] + Processing work unit
[11:22:35] Core required: FahCore_a1.exe
[11:22:35] Core found.
[11:22:36] Working on Unit 04 [March 25 11:22:36]
[11:22:36] + Working ...
[11:22:36] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 04 -checkpoint 15 -verbose -lifeline 7274 -version 601'
[11:22:36]
[11:22:36] *------------------------------*
[11:22:36] Folding@Home Gromacs SMP Core
[11:22:36] Version 1.74 (November 27, 2006)
[11:22:36]
[11:22:36] Preparing to commence simulation
[11:22:36] - Ensuring status. Please wait- Created dyn
[11:22:36] - Files status OK
[11:22:36] Error: Work unit read from disk is invalid
[11:22:36] Finalizing output
[11:22:36] - Expanded 2435509 -> 12886013 (decompressed 529.0 percent)
[11:22:36] - Starting from initial work packet
[11:22:36]
[11:22:36] Project: 2605 (Run 9, Clone 571, Gen 5)
[11:22:36]
[11:22:36] Assembly optimizations on if available.
[11:22:36] Entering M.D.
[11:22:53] 0 percent)
[11:22:53] - Starting from initial work packet
[11:22:53]
[11:22:53] Project: 2605 (Run 9, Clone 571, Gen 5)
[11:22:53]
[11:22:53] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=Deepthought
NNODES=4, MYRANK=1, HOSTNAME=Deepthought
NNODES=4, MYRANK=0, HOSTNAME=Deepthought
NNODES=4, MYRANK=3, HOSTNAME=Deepthought
NODEID=0 argc=15
NODEID=3 argc=15
NODEID=2 argc=15
NODEID=1 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
starting mdrun 'Protein in POPC'
500000 steps, 1000.0 ps.
[11:23:01] Protein: Protein in POPC
[11:23:01] Writing local files
[11:23:01] Extra SSE boost OK.
[0]0:Return code = 0, signaled with Segmentation fault
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Segmentation fault
[11:23:06] CoreStatus = 0 (0)
[11:23:06] Client-core communications error: ERROR 0x0
[11:23:06] Deleting current work unit & continuing...
[0]0:Return code = 0, signaled with Quit
[0]1:Return code = 18
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
[11:27:28] - Warning: Could not delete all work unit files (4): Core returned invalid code
[11:27:28] Trying to send all finished work units
[11:27:28] + No unsent completed units remaining.
[11:27:28] - Preparing to get new work unit...
[11:27:28] + Attempting to get work packet
[11:27:28] - Will indicate memory of 1005 MB
[11:27:28] - Connecting to assignment server
[11:27:28] Connecting to http://assign.stanford.edu:8080/
[11:27:28] Posted data.
[11:27:28] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[11:27:28] + News From Folding@Home: Welcome to Folding@Home
[11:27:29] Loaded queue successfully.
[11:27:29] Connecting to http://171.64.65.56:8080/
[11:27:31] Posted data.
[11:27:31] Initial: 0000; - Receiving payload (expected size: 2436021)
[11:27:52] - Downloaded at ~113 kB/s
[11:27:52] - Averaged speed for that direction ~238 kB/s
[11:27:52] + Received work.
[11:27:52] + Closed connections
[11:27:57]
[11:27:57] + Processing work unit
[11:27:57] Core required: FahCore_a1.exe
[11:27:57] Core found.
[11:27:57] Working on Unit 05 [March 25 11:27:57]
[11:27:57] + Working ...
[11:27:57] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 05 -checkpoint 15 -verbose -lifeline 7274 -version 601'
[11:27:57]
[11:27:57] *------------------------------*
[11:27:57] Folding@Home Gromacs SMP Core
[11:27:57] Version 1.74 (November 27, 2006)
[11:27:57]
[11:27:57] Preparing to commence simulation
[11:27:57] - Ensuring status. Please wait.
[11:28:14] - Looking at optimizations...
[11:28:14] - Working with standard loops on this execution.
[11:28:14] - Created dyn
[11:28:14] - Files status OK
[11:28:14] Error: Work unit read from disk is invalid
[11:28:14] Finalizing output
[11:28:15] - Expanded 2435509 -> 12886013 (decompressed 529.0 percent)
[11:28:15] - Starting from initial work packet
[11:28:15]
[11:28:15] Project: 2605 (Run 9, Clone 571, Gen 5)
[11:28:15]
[11:28:15] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=Deepthought
NNODES=4, MYRANK=1, HOSTNAME=Deepthought
NNODES=4, MYRANK=0, HOSTNAME=Deepthought
NNODES=4, MYRANK=3, HOSTNAME=Deepthought
NODEID=0 argc=15
NODEID=3 argc=15
NODEID=2 argc=15
NODEID=1 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
[11:28:22] Rejecting checkpoint
starting mdrun 'Protein in POPC'
500000 steps, 1000.0 ps.
[11:28:23] Protein: Protein in POPCExtra SSE boost OK.
[11:28:23]
[11:28:23] Extra SSE boost OK.
[11:28:23] Writing local files
[11:28:23] Completed 0 out of 500000 steps (0 percent)
[0]0:Return code = 0, signaled with Segmentation fault
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Segmentation fault
[11:28:28] CoreStatus = 0 (0)
[11:28:28] Client-core communications error: ERROR 0x0
[11:28:28] Deleting current work unit & continuing...
[0]0:Return code = 0, signaled with Quit
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 18
[0]3:Return code = 0, signaled with Quit
[11:32:50] - Warning: Could not delete all work unit files (5): Core returned invalid code
[11:32:50] Trying to send all finished work units
[11:32:50] + No unsent completed units remaining.
[11:32:50] - Preparing to get new work unit...
[11:32:50] + Attempting to get work packet
[11:32:50] - Will indicate memory of 1005 MB
[11:32:50] - Connecting to assignment server
[11:32:50] Connecting to http://assign.stanford.edu:8080/
[11:32:50] Posted data.
[11:32:50] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[11:32:50] + News From Folding@Home: Welcome to Folding@Home
[11:32:50] Loaded queue successfully.
[11:32:50] Connecting to http://171.64.65.56:8080/
[11:32:53] Posted data.
[11:32:53] Initial: 0000; - Receiving payload (expected size: 2436021)
[11:33:15] - Downloaded at ~108 kB/s
[11:33:15] - Averaged speed for that direction ~212 kB/s
[11:33:15] + Received work.
[11:33:15] + Closed connections
[11:33:20]
[11:33:20] + Processing work unit
[11:33:20] Core required: FahCore_a1.exe
[11:33:20] Core found.
[11:33:20] Working on Unit 06 [March 25 11:33:20]
[11:33:20] + Working ...
[11:33:20] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 06 -checkpoint 15 -verbose -lifeline 7274 -version 601'
[11:33:20]
[11:33:20] *------------------------------*
[11:33:20] Folding@Home Gromacs SMP Core
[11:33:20] Version 1.74 (November 27, 2006)
[11:33:20]
[11:33:20] Preparing to commence simulation
[11:33:20] - Ensuring status. Please wait.
[11:33:37] - Looking at optimizations...
[11:33:37] - Working with standard loops on this execution.
[11:33:37] - Created dyn
[11:33:37] - Files status OK
[11:33:37] Error: Work unit read from disk is invalid
[11:33:37] Finalizing output
[11:33:38] - Expanded 2435509 -> 12886013 (decompressed 529.0 percent)
[11:33:38] - Starting from initial work packet
[11:33:38]
[11:33:38] Project: 2605 (Run 9, Clone 571, Gen 5)
[11:33:38]
[11:33:38] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=Deepthought
NNODES=4, MYRANK=1, HOSTNAME=Deepthought
NNODES=4, MYRANK=2, HOSTNAME=Deepthought
NNODES=4, MYRANK=3, HOSTNAME=Deepthought
NODEID=1 argc=15
NODEID=0 argc=15
NODEID=3 argc=15
NODEID=2 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
[11:33:45] Rejecting checkpoint
[11:33:45] OPC
[11:33:45] Writing local files
starting mdrun 'Protein in POPC'
500000 steps, 1000.0 ps.
[11:33:46] Extra SSE boost OK.
[11:33:46]
[11:33:46] Extra SSE boost OK.
[11:33:46] Writing local files
[11:33:46] Completed 0 out of 500000 steps (0 percent)
[0]0:Return code = 0, signaled with Segmentation fault
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Segmentation fault
[11:33:51] CoreStatus = 0 (0)
[11:33:51] Client-core communications error: ERROR 0x0
[11:33:51] - Attempting to download new core...
[11:33:51] + Downloading new core: FahCore_a1.exe
[11:33:51] Downloading core (/~pande/Linux/x86//Core_a1.fah from www.stanford.edu)
[11:33:51] Initial: AFDE; + 10240 bytes downloaded
[11:33:52] Initial: B54E; + 20480 bytes downloaded
[11:33:52] Initial: D6C2; + 30720 bytes downloaded
[11:33:52] Initial: 9F08; + 40960 bytes downloaded
[11:33:52] Initial: C6C3; + 51200 bytes downloaded
[11:33:52] Initial: EBA8; + 61440 bytes downloaded
[11:33:52] Initial: 3141; + 71680 bytes downloaded
[11:33:52] Initial: D218; + 81920 bytes downloaded
[11:33:52] Initial: F7AC; + 92160 bytes downloaded
[11:33:52] Initial: 820B; + 102400 bytes downloaded
[11:33:52] Initial: 1B1E; + 112640 bytes downloaded
[11:33:53] Initial: C249; + 122880 bytes downloaded
[11:33:53] Initial: 5EBD; + 133120 bytes downloaded
[11:33:53] Initial: CD6C; + 143360 bytes downloaded
[11:33:53] Initial: 221C; + 153600 bytes downloaded
[11:33:53] Initial: DB18; + 163840 bytes downloaded
[11:33:53] Initial: 237E; + 174080 bytes downloaded
[11:33:53] Initial: AEEC; + 184320 bytes downloaded
[11:33:53] Initial: 4C66; + 194560 bytes downloaded
[11:33:53] Initial: AE1E; + 204800 bytes downloaded
[11:33:53] Initial: A37E; + 215040 bytes downloaded
[11:33:53] Initial: 8193; + 225280 bytes downloaded
[11:33:53] Initial: 9F05; + 235520 bytes downloaded
[11:33:54] Initial: AAA5; + 245760 bytes downloaded
[11:33:54] Initial: 6400; + 256000 bytes downloaded
[11:33:54] Initial: 6E3D; + 266240 bytes downloaded
[11:33:54] Initial: EA6B; + 276480 bytes downloaded
[11:33:54] Initial: 820A; + 286720 bytes downloaded
[11:33:55] Initial: DE6D; + 296960 bytes downloaded
[11:33:55] Initial: B97B; + 307200 bytes downloaded
[11:33:55] Initial: 9D5D; + 317440 bytes downloaded
[11:33:55] Initial: 91D7; + 327680 bytes downloaded
[11:33:55] Initial: BB3B; + 337920 bytes downloaded
[11:33:55] Initial: 611B; + 348160 bytes downloaded
[11:33:55] Initial: B290; + 358400 bytes downloaded
[11:33:55] Initial: B0AA; + 368640 bytes downloaded
[11:33:55] Initial: 6A85; + 378880 bytes downloaded
[11:33:55] Initial: BF10; + 389120 bytes downloaded
[11:33:55] Initial: A818; + 399360 bytes downloaded
[11:33:55] Initial: 90E1; + 409600 bytes downloaded
[11:33:55] Initial: 2869; + 419840 bytes downloaded
[11:33:55] Initial: CAFE; + 430080 bytes downloaded
[11:33:55] Initial: 414B; + 440320 bytes downloaded
[11:33:55] Initial: 9B7A; + 450560 bytes downloaded
[11:33:55] Initial: 33AA; + 460800 bytes downloaded
[11:33:55] Initial: B1D5; + 471040 bytes downloaded
[11:33:56] Initial: 0206; + 481280 bytes downloaded
[11:33:56] Initial: 11F4; + 491520 bytes downloaded
[11:33:56] Initial: 31B5; + 501760 bytes downloaded
[11:33:56] Initial: 46B2; + 512000 bytes downloaded
[11:33:56] Initial: 3113; + 522240 bytes downloaded
[11:33:56] Initial: 525A; + 532480 bytes downloaded
[11:33:56] Initial: 66F9; + 542720 bytes downloaded
[11:33:56] Initial: 9672; + 552960 bytes downloaded
[11:33:56] Initial: 9058; + 563200 bytes downloaded
[11:33:56] Initial: 49ED; + 573440 bytes downloaded
[11:33:56] Initial: 515D; + 583680 bytes downloaded
[11:33:56] Initial: CAC0; + 593920 bytes downloaded
[11:33:57] Initial: 0B15; + 604160 bytes downloaded
[11:33:57] Initial: 5A89; + 614400 bytes downloaded
[11:33:57] Initial: 0F31; + 624640 bytes downloaded
[11:33:58] Initial: 2BC3; + 634880 bytes downloaded
[11:33:58] Initial: 3C06; + 645120 bytes downloaded
[11:33:58] Initial: 89C7; + 655360 bytes downloaded
[11:33:58] Initial: 6C54; + 665600 bytes downloaded
[11:33:58] Initial: 8D4D; + 675840 bytes downloaded
[11:33:58] Initial: EA59; + 686080 bytes downloaded
[11:33:58] Initial: C563; + 696320 bytes downloaded
[11:33:58] Initial: 8D45; + 706560 bytes downloaded
[11:33:58] Initial: 9BD0; + 716800 bytes downloaded
[11:33:58] Initial: 130C; + 727040 bytes downloaded
[11:33:58] Initial: CDA1; + 737280 bytes downloaded
[11:33:58] Initial: 7681; + 747520 bytes downloaded
[11:33:58] Initial: 1110; + 757760 bytes downloaded
[11:33:58] Initial: EE35; + 768000 bytes downloaded
[11:33:58] Initial: E5E1; + 778240 bytes downloaded
[11:33:58] Initial: 4B97; + 788480 bytes downloaded
[11:33:58] Initial: 4D75; + 798720 bytes downloaded
[11:33:58] Initial: E268; + 808960 bytes downloaded
[11:33:58] Initial: FAC6; + 819200 bytes downloaded
[11:33:58] Initial: A625; + 829440 bytes downloaded
[11:33:59] Initial: A12A; + 839680 bytes downloaded
[11:33:59] Initial: 83A3; + 849920 bytes downloaded
[11:33:59] Initial: 3BEA; + 860160 bytes downloaded
[11:33:59] Initial: 5298; + 870400 bytes downloaded
[11:33:59] Initial: 4811; + 880640 bytes downloaded
[11:33:59] Initial: EB07; + 890880 bytes downloaded
[11:33:59] Initial: 83FC; + 901120 bytes downloaded
[11:33:59] Initial: FA4E; + 911360 bytes downloaded
[11:33:59] Initial: 2945; + 921600 bytes downloaded
[11:33:59] Initial: 6BC9; + 931840 bytes downloaded
[11:33:59] Initial: E495; + 942080 bytes downloaded
[11:34:00] Initial: 1050; + 952320 bytes downloaded
[11:34:00] Initial: 2070; + 962560 bytes downloaded
[11:34:00] Initial: 1083; + 972800 bytes downloaded
[11:34:00] Initial: 96E5; + 983040 bytes downloaded
[11:34:00] Initial: 3EEE; + 993280 bytes downloaded
[11:34:00] Initial: 84AC; + 1003520 bytes downloaded
[11:34:00] Initial: 3B6B; + 1013760 bytes downloaded
[11:34:00] Initial: 3030; + 1024000 bytes downloaded
[11:34:00] Initial: 4B95; + 1034240 bytes downloaded
[11:34:00] Initial: D9BC; + 1044480 bytes downloaded
[11:34:00] Initial: C5B8; + 1054720 bytes downloaded
[11:34:00] Initial: A5EF; + 1064960 bytes downloaded
[11:34:01] Initial: 28DC; + 1075200 bytes downloaded
[11:34:01] Initial: 0943; + 1085440 bytes downloaded
[11:34:01] Initial: 338A; + 1095680 bytes downloaded
[11:34:01] Initial: ADFC; + 1105920 bytes downloaded
[11:34:01] Initial: ED39; + 1116160 bytes downloaded
[11:34:01] Initial: D284; + 1126400 bytes downloaded
[11:34:01] Initial: 0057; + 1136640 bytes downloaded
[11:34:01] Initial: 3E65; + 1146880 bytes downloaded
[11:34:01] Initial: FCB5; + 1157120 bytes downloaded
[11:34:01] Initial: A7D8; + 1167360 bytes downloaded
[11:34:01] Initial: A564; + 1177600 bytes downloaded
[11:34:02] Initial: 7654; + 1187840 bytes downloaded
[11:34:02] Initial: 0848; + 1198080 bytes downloaded
[11:34:02] Initial: 471E; + 1208320 bytes downloaded
[11:34:02] Initial: A7F3; + 1218560 bytes downloaded
[11:34:02] Initial: FA59; + 1228800 bytes downloaded
[11:34:02] Initial: FBF2; + 1239040 bytes downloaded
[11:34:02] Initial: F54E; + 1249280 bytes downloaded
[11:34:02] Initial: 3023; + 1259520 bytes downloaded
[11:34:02] Initial: AB37; + 1269760 bytes downloaded
[11:34:02] Initial: 0896; + 1280000 bytes downloaded
[11:34:02] Initial: 756D; + 1290240 bytes downloaded
[11:34:02] Initial: C1E7; + 1300480 bytes downloaded
[11:34:03] Initial: 9AAC; + 1310720 bytes downloaded
[11:34:03] Initial: E5AF; + 1320960 bytes downloaded
[11:34:03] Initial: BBE3; + 1331200 bytes downloaded
[11:34:03] Initial: 3596; + 1341440 bytes downloaded
[11:34:03] Initial: 924C; + 1351680 bytes downloaded
[11:34:03] Initial: 30B7; + 1361920 bytes downloaded
[11:34:03] Initial: AEB7; + 1372160 bytes downloaded
[11:34:03] Initial: 7D25; + 1382400 bytes downloaded
[11:34:03] Initial: 0FEB; + 1392640 bytes downloaded
[11:34:03] Initial: 3131; + 1402880 bytes downloaded
[11:34:03] Initial: 755F; + 1413120 bytes downloaded
[11:34:04] Initial: 4800; + 1423360 bytes downloaded
[11:34:04] Initial: 1282; + 1433600 bytes downloaded
[11:34:04] Initial: B2A3; + 1443840 bytes downloaded
[11:34:04] Initial: 21E9; + 1454080 bytes downloaded
[11:34:04] Initial: 789E; + 1464320 bytes downloaded
[11:34:04] Initial: 8542; + 1474560 bytes downloaded
[11:34:04] Initial: 3A56; + 1484800 bytes downloaded
[11:34:04] Initial: D4FE; + 1490945 bytes downloaded
[11:34:04] Verifying core Core_a1.fah...
[11:34:04] Signature is VALID
[11:34:04]
[11:34:04] Trying to unzip core FahCore_a1.exe
[11:34:05] Decompressed FahCore_a1.exe (3625104 bytes) successfully
[11:34:05] + Core successfully engaged
[11:34:05] Deleting current work unit & continuing...
[0]0:Return code = 0, signaled with Quit
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 18
[11:38:27] - Warning: Could not delete all work unit files (6): Core returned invalid code
[11:38:27] Trying to send all finished work units
[11:38:27] + No unsent completed units remaining.
[11:38:27] - Preparing to get new work unit...
[11:38:27] + Attempting to get work packet
[11:38:27] - Will indicate memory of 1005 MB
[11:38:27] - Connecting to assignment server
[11:38:27] Connecting to http://assign.stanford.edu:8080/
[11:38:27] Posted data.
[11:38:27] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[11:38:27] + News From Folding@Home: Welcome to Folding@Home
[11:38:27] Loaded queue successfully.
[11:38:27] Connecting to http://171.64.65.56:8080/
[11:38:27] Posted data.
[11:38:27] Initial: 0000; - Error: Bad packet type from server, expected work assignment
[11:38:27] - Attempt #1 to get work failed, and no other work to do.
Waiting before retry.
[11:38:40] + Attempting to get work packet
[11:38:40] - Will indicate memory of 1005 MB
[11:38:40] - Connecting to assignment server
[11:38:40] Connecting to http://assign.stanford.edu:8080/
[11:38:40] Posted data.
[11:38:40] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[11:38:40] + News From Folding@Home: Welcome to Folding@Home
[11:38:40] Loaded queue successfully.
[11:38:40] Connecting to http://171.64.65.56:8080/
[11:38:43] Posted data.
[11:38:43] Initial: 0000; - Receiving payload (expected size: 2434520)
[11:39:04] - Downloaded at ~113 kB/s
[11:39:04] - Averaged speed for that direction ~192 kB/s
[11:39:04] + Received work.
[11:39:04] + Closed connections
[11:39:09]
[11:39:09] + Processing work unit
[11:39:09] Core required: FahCore_a1.exe
[11:39:09] Core found.
[11:39:09] Working on Unit 07 [March 25 11:39:09]
[11:39:09] + Working ...
[11:39:09] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 07 -checkpoint 15 -verbose -lifeline 7274 -version 601'
[11:39:09]
[11:39:09] *------------------------------*
[11:39:09] Folding@Home Gromacs SMP Core
[11:39:09] Version 1.74 (November 27, 2006)
[11:39:09]
[11:39:09] Preparing to commence simulation
[11:39:09] - Ensuring status. Please wait.
[11:39:26] - Looking at optimizations...
[11:39:26] - Working with standard loops on this execution.
[11:39:26] - Created dyn
[11:39:26] - Files status OK
[11:39:26] Error: Work unit read from disk is invalid
[11:39:26] Finalizing output
[11:39:27] - Expanded 2434008 -> 12897049 (decompressed 529.8 percent)
[11:39:27] - Starting from initial work packet
[11:39:27]
[11:39:27] Project: 2605 (Run 7, Clone 492, Gen 36)
[11:39:27]
[11:39:27] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=Deepthought
NNODES=4, MYRANK=2, HOSTNAME=Deepthought
NNODES=4, MYRANK=1, HOSTNAME=Deepthought
NNODES=4, MYRANK=3, HOSTNAME=Deepthought
NODEID=3 argc=15
NODEID=2 argc=15
NODEID=0 argc=15
NODEID=1 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
[11:39:34] Rejecting checkpoint
[11:39:35] Protein: Protein in POPC
starting mdrun 'Protein in POPC'
500000 steps, 1000.0 ps.
[11:39:35] xtra SSE boost OK.
[11:39:35]
[11:39:35] Extra SSE boost OK.
[11:39:36] Writing local files
[11:39:36] Completed 0 out of 500000 steps (0 percent)
[11:54:35] Timered checkpoint triggered.
[11:58:38] - Autosending finished units...
[11:58:38] Trying to send all finished work units
[11:58:38] + No unsent completed units remaining.
[11:58:38] - Autosend completed
[12:01:49] Writing local files
[12:01:49] Completed 5000 out of 500000 steps (1 percent)
[12:16:49] Timered checkpoint triggered.
[12:26:12] Writing local files