when you clear the cmos you are resetting all the bios settings to the default, and clearing some stuff like passwords and date entries on most of the mainboards. this wont damage the card.
I've killed a board, maybe two, by doing this, although that's not the case for all boards. You're just killing the BIOS, so you can flash that if you have another motherboard.
It depends on the board, I think. I've killed two different Abit boards by doing that- not just scrambled-BIOS dead, they were dead for good.
My current board, a Soyo, seems to be protected against it- I've sat and hammered the ON switch a few times before I realized my mistake and flipped that CMOS CLR jumper back, and it still works fine.
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