Motherboard LED error codes at boot would not be driven by chip set driver problems. They aren't even loaded until you are booting into Windows.
The first thing I would do is check the system drive for physical problems using CrystaldiskInfo. If you get any color but blue and any report other than "Good" I would replace the drive.
If the physical health of the drive checks out, the second thing I would do is check for system file integrity:
https://support.microsoft.com/en-us/help/4026529/windows-10-using-system-file-checker
The third thing I would do is run chkdsk /f /r from Powershell with admin priviledges.
If you have Windows 10 install media then you can initiate an install from within windows and it will give you the opportunity to choose the option of keeping your programs and data in place rather than doing a destructive clean install. This "in place" install often corrects system file brokenness that sfc /scannow can't.
If none of the above works, do a destructive clean install. Since you already have Windows 10 on the machine it will automatically activate if you do a clean install.