I used a ~ $1.50 90% motherboard adapter for the power (24 pin + 2x cpu cables) connections from my PSU. This made it easier to connect and disconnect when swapping out MBs for benching. As I stated earlier, everything was going good on benching with my Single Stage unit (-35c) until my asus r3e refused to post. I had benched it that morning (single core) and was going to try benching it with the cpu fully enabled. I started the motherboard about 3-4 hours after I had shut it down and the motherboard refused to post. To compound my errors in not finding the problem for weeks, I was using 2 different x58 motherboards (evga + asus) and 3 different cpus (i7-965xe, 975xe, and 980x). I was able to test and verify the motherboards worked with a AIO and a separate PSU BUT would refuse to boot/post or run for more that 1 minute when connected to benching table components. This change on monday as I had setup the benching table again (ASUS R3E) but when I started the motherboard it acted like there was a short with the PSU. <- This time I had also placed eraser around the cpu socket + did not tighten down the SS on to the cpu ->. I could hear the PSU switching on and off every 1 sec. Wishing to remove the possibility that my PSU (EVGA 1600w) was BAD/RMA, I removed the 90% adapters from the PSUs motherboard power connectors. With theses now removed, the motherboard booted and ran windows 7 with no problem.
^ This leads me to conclude that these cheap 90% adapters where the problem.