The card will run at PCIE16X (gen 2) on your system. It is a gen 3 card. Pcie Gen 3 X 8 is equivalent to pcie gen 2 x16. So you are only going to give the card half the bandwidth it was designed for. In real world usage you might see a one or two percent drop in performance with the 680. If you were getting a 780 or a titan youd probably really notice it but with a 680 it'll be fine.
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