Ubuntu installed and enabled the cpufreq governor on my laptop without any prompts, though I can't verify that it does this with a desktop machine as well. I wouldn't be too surprised though, as it's transparent with normally scheduled applications, and ought to save power when the processor is idle.
blueswitch, try typing "lsmod | grep cpufreq". If you get any hits that means the module is loaded into the kernel, which means that the governor may be active as well. Under Dapper it's "powernowd", it probably still is under Edgy and Feisty.
Resolving the problem might mean cpu frequency management off, or renice-ing f@h to 0 (1 through 19 might work for you, didn't for me). The former is probably the preferred method, since you won't need the frequency scaling, and you'll still be able to access the computer without getting lagged.