In my experience, if you have the same raid controller on your new mobo, and connect the drives in the same order, it will work.
I know for a fact that this works with the Promise Raid controllers, and on at least on of the mobo's i've had with the High Point controller.
I have, however learned from experience that a PCI Raid Card is the best way to go for high speed, and security. If you fry your mobo, you can plug the card, and drives into another one, and have all your data intact.
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