- Joined
- Jan 27, 2011
- Location
- Beautiful Sunny Winfield
The links to the wrappers work now. They didn't yesterday. I guess that the problem was temporary. The syntax on the wget commands is wrong. I offered some suggestions on the 'discussion' tab of the page. I said:
(Apologies for the mangling of my formatting from the wiki.)
You state "You must also have either be running the 195 or 256 drivers from nvidia for cuda 3.0 support." It is working fine for me with the "260.19.29"
The reference to older drivers and the broken links led me to believe that the page was out of date. Apparently that first impression was wrong.
It would probably be worth adding that to the instructions (along with any other requirements.) Also it would be useful if HFM.exe would check the version of mono and report problems rather than producing the following output:As for hfm. Just make sure you have mono 2.6 or later and it should work like a charm. I've had it running since the start.
Code:
hbarta@olive:~/folding/hfm$ mono HFM.exe
** (HFM.exe:28752): WARNING **: The following assembly referenced from /home/hbarta/folding/hfm/protobuf-net.dll could not be loaded:
Assembly: System.Runtime.Serialization (assemblyref_index=2)
Version: 3.0.0.0
Public Key: b77a5c561934e089
The assembly was not found in the Global Assembly Cache, a path listed in the MONO_PATH environment variable, or in the location of the executing assembly (/home/hbarta/folding/hfm/).
** (HFM.exe:28752): WARNING **: Could not load file or assembly 'System.Runtime.Serialization, Version=3.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089' or one of its dependencies.
** (HFM.exe:28752): WARNING **: Could not load file or assembly 'System.Runtime.Serialization, Version=3.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089' or one of its dependencies.
Stacktrace:
at ProtoBuf.Serializer.TryGetTag (System.Reflection.MemberInfo,int&,string&,ProtoBuf.DataFormat&,ProtoBuf.MemberSerializationOptions&) <0xffffffff>
at ProtoBuf.Serializer.TryGetTag (System.Reflection.MemberInfo,int&,string&,ProtoBuf.DataFormat&,ProtoBuf.MemberSerializationOptions&) <0x00030>
at ProtoBuf.Serializer`1<object>.Build () <0x00397>
at ProtoBuf.Serializer`1<HFM.Instances.ProteinBenchmarkCollection>.DeserializeChecked<HFM.Instances.ProteinBenchmarkCollection> (HFM.Instances.ProteinBenchmarkCollection&,ProtoBuf.SerializationContext) <0x00033>
at ProtoBuf.SerializerItemProxy`2<HFM.Instances.ProteinBenchmarkCollection, HFM.Instances.ProteinBenchmarkCollection>.Deserialize (HFM.Instances.ProteinBenchmarkCollection&,ProtoBuf.SerializationContext) <0x0006b>
at ProtoBuf.Serializer.Deserialize<object> (ProtoBuf.SerializationContext) <0x00080>
at ProtoBuf.Serializer.Deserialize<object> (System.IO.Stream) <0x0004b>
at HFM.Instances.ProteinBenchmarkContainer.Deserialize (string) <0x00083>
at HFM.Instances.ProteinBenchmarkContainer.Read (bool) <0x00037>
at HFM.Instances.ProteinBenchmarkContainer.Read () <0x0000f>
at HFM.Program.Initialize (System.Collections.Generic.IEnumerable`1<HFM.Classes.Argument>) <0x00481>
at HFM.Program.Main (string[]) <0x001ab>
at (wrapper runtime-invoke) HFM.Program.runtime_invoke_void_object (object,intptr,intptr,intptr) <0xffffffff>
Native stacktrace:
mono() [0x47b77f]
mono() [0x4aef3f]
/lib/libpthread.so.0(+0xf8f0) [0x7f401e5448f0]
mono(mono_object_new_specific+0x16) [0x4caa86]
mono(mono_exception_from_name_domain+0x1d) [0x50e1ed]
mono(mono_exception_from_name_msg+0xe) [0x50e4de]
mono() [0x41eb36]
mono() [0x483521]
[0x4038c168]
Debug info from gdb:
[Thread debugging using libthread_db enabled]
[New Thread 0x7f401ce18700 (LWP 28754)]
[New Thread 0x7f401f247700 (LWP 28753)]
0x00007f401e54393d in read () from /lib/libpthread.so.0
3 Thread 0x7f401f247700 (LWP 28753) 0x00007f401e54411d in nanosleep () from /lib/libpthread.so.0
2 Thread 0x7f401ce18700 (LWP 28754) 0x00007f401e542b50 in sem_wait () from /lib/libpthread.so.0
* 1 Thread 0x7f401f239740 (LWP 28752) 0x00007f401e54393d in read () from /lib/libpthread.so.0
Thread 3 (Thread 0x7f401f247700 (LWP 28753)):
#0 0x00007f401e54411d in nanosleep () from /lib/libpthread.so.0
#1 0x0000000000556342 in ?? ()
#2 0x00007f401e53b9ca in start_thread () from /lib/libpthread.so.0
#3 0x00007f401e01570d in clone () from /lib/libc.so.6
#4 0x0000000000000000 in ?? ()
Thread 2 (Thread 0x7f401ce18700 (LWP 28754)):
#0 0x00007f401e542b50 in sem_wait () from /lib/libpthread.so.0
#1 0x00000000004e4aaa in ?? ()
#2 0x0000000000505035 in ?? ()
#3 0x0000000000570073 in ?? ()
#4 0x000000000058de21 in ?? ()
#5 0x00007f401e53b9ca in start_thread () from /lib/libpthread.so.0
#6 0x00007f401e01570d in clone () from /lib/libc.so.6
#7 0x0000000000000000 in ?? ()
Thread 1 (Thread 0x7f401f239740 (LWP 28752)):
#0 0x00007f401e54393d in read () from /lib/libpthread.so.0
#1 0x000000000047b8f4 in ?? ()
#2 0x00000000004aef3f in ?? ()
#3 <signal handler called>
#4 0x00000000004caa86 in mono_object_new_specific ()
#5 0x000000000050e1ed in mono_exception_from_name_domain ()
#6 0x000000000050e4de in mono_exception_from_name_msg ()
#7 0x000000000041eb36 in ?? ()
#8 0x0000000000483521 in ?? ()
#9 0x000000004038c168 in ?? ()
#10 0x0000000000000000 in ?? ()
=================================================================
Got a SIGSEGV while executing native code. This usually indicates
a fatal error in the mono runtime or one of the native libraries
used by your application.
=================================================================
Aborted
hbarta@olive:~/folding/hfm$hank
